Job Description
Project Objective and Impact:
· Harmonizing internal OMICS data sets, reformatting and curation meta data is an essential factor for enabling effective data storage according to the FAIR* data principles and future integrative analysis. (*FAIR: findable, accessible, interoperable, and reusable)
· Publicly available data is important to contextualize internal OMICS data for target identification and informing internal analysis/studies. Proactive and broad analysis of published data sets would expand the knowledge base for Neuroscience data analysis and enable future projects.
Data sets may include:
· Focus on Alzheimer Disease, Parkinson Disease and ALS
· Human brain and peripheral tissue bulk transcriptome, proteome, metabolome.
· Pre-clinical model bulk transcriptome and proteome data
Main deliverables:
· Re-formatting and harmonization of analysis results, curation of meta data, preparing for data base backend upload.
· Preprocessing, differential analysis, pathway enrichment analysis, of publicly available data sets and formatting for data base backend upload
· Depending on need integration and harmonization across data sets, including internal datasets
What are the top 5 skills/requirements this person is required have?
· Required Skill 1: Good knowledge of R and/or python programming
· Required Skill 2: Experience with data analysis, data handling and processing optimally in a bioinformatics context
· Required Skill 3: Basic understanding of OMICS data
· Required Skill 4: Basic knowledge of SQL/databases
· Required Skill 5: Proven to work independently
What years of experience, education, and/or certification is required?
· Bachelor, with 1 year of hands-on experience
· Master, with no experience
What is a nice to have (but not required) regarding skills, requirements, experience, education, or certification?
· Hands-on experience with OMICS data analysis and handling, especially bulk transcriptomics
· Hands- on experience with SQL data bases
What is the environment that this person will be working in (i.e. group setting vs individual role)?
· Part of the international bioinformatics team
· Remote in EST time zone
· Dedicated PhD level scientist as supervisor for the project duration
Company Description
Collabera is a Global Digital Solutions Company providing Software Engineering Solutions for the world's most tech-forward organizations in the areas of Engineering, Cloud and Data/AI. With its roots serving the engineering needs of the world's most recognized businesses in Technology, Financial Services, Telecom and Healthcare, Collabera today operates across 60 locations in 11 countries, serves 30% of the Fortune 500, and has exceeded the industry growth rate by 3-4x for several years.
Collabera is a Global Digital Solutions Company providing Software Engineering Solutions for the world's most tech-forward organizations in the areas of Engineering, Cloud and Data/AI. With its roots serving the engineering needs of the world's most recognized businesses in Technology, Financial Services, Telecom and Healthcare, Collabera today operates across 60 locations in 11 countries, serves 30% of the Fortune 500, and has exceeded the industry growth rate by 3-4x for several years.